Incorporating putatively neutral and adaptive genomic data into marine conservation planning

The availability of genomic data for an increasing number of species makes it possible to incorporate evolutionary processes into conservation plans. Recent studies show how genetic data can inform spatial conservation prioritization (SCP), but they focus on metrics of diversity and distinctness derived primarily from neutral genetic data sets. Identifying adaptive genetic markers can provide important information regarding the capacity for populations to adapt to environmental change. Yet, the effect of including metrics based on adaptive genomic data into SCP in comparison to more widely used neutral genetic metrics has not been explored. We used existing genomic data on a commercially exploited species, the giant California sea cucumber (Parastichopus californicus), to perform SCP for the coastal region of British Columbia (BC), Canada. Using a RAD-seq data set for 717 P. californicus individuals across 24 sampling locations, we identified putatively adaptive (i.e., candidate) single nucleotide polymorphisms (SNPs) based on genotype–environment associations with seafloor temperature. We calculated various metrics for both neutral and candidate SNPs and compared SCP outcomes with independent metrics and combinations of metrics. Priority areas varied depending on whether neutral or candidate SNPs were used and on the specific metric used. For example, targeting sites with a high frequency of warm-temperature-associated alleles to support persistence under future warming prioritized areas in the southern coastal region. In contrast, targeting sites with high expected heterozygosity at candidate loci to support persistence under future environmental uncertainty prioritized areas in the north. When combining metrics, all scenarios generated intermediate solutions, protecting sites that span latitudinal and thermal gradients. Our results demonstrate that distinguishing between neutral and adaptive markers can affect conservation solutions and emphasize the importance of defining objectives when choosing among various genomic metrics for SCP.     

Effects of climate and land-cover change on the conservation status of gibbons

Species shift their distribution in response to climate and land-cover change, which may result in a spatial mismatch between currently protected areas (PAs) and priority conservation areas (PCAs). We examined the effects of climate and land-cover change on potential range of gibbons and sought to identify PCAs that would conserve them effectively. We collected global gibbon occurrence points and modeled (ecological niche model) their current and potential 2050s ranges under climate-change and different land-cover-change scenarios. We examined change in range and PA coverage between the current and future ranges of each gibbon species. We applied spatial conservation prioritization to identify the top 30% PCAs for each species. We then determined how much of the PCAs are conserved in each country within the global range of gibbons. On average, 31% (SD 22) of each species’ current range was covered in PAs. PA coverage of the current range of 9 species was <30%. Nine species lost on average 46% (SD 29) of their potential range due to climate change. Under climate-change with an optimistic land-cover-change scenario (B1), 12 species lost 39% (SD 28) of their range. In a pessimistic land-cover-change scenario (A2), 15 species lost 36% (SD 28) of their range. Five species lost significantly more range under the A2 scenario than the B1 scenario (p = 0.01, SD 0.01), suggesting that gibbons will benefit from effective management of land cover. PA coverage of future range was <30% for 11 species. On average, 32% (SD 25) of PCAs were covered by PAs. Indonesia contained more species and PCAs and thus has the greatest responsibility for gibbon conservation. Indonesia, India, and Myanmar need to expand their PAs to fulfill their responsibility to gibbon conservation. Our results provide a baseline for global gibbon conservation, particularly for countries lacking gibbon research capacity.     

基于GIS的海洋底栖生物栖息密度空间插值方法

在地理信息系统即GIS的支持下,分别采用反距离加权(inverse distance weighted,IDW)、普通克里格(ordinary krig-ing,OK)、规则样条(regularize spline,RS)和张力样条(tension spline,TS)4种插值方法对2006年7月获得的大连湾底栖生物栖息密度的数据进行空间插值处理,并对插值结果的精确度进行交叉验证,分析和比较不同插值方法获得的分布图。结果表明,插值精确度普通克里格>反距离加权>张力样条>规则样条;4种方法均能较客观的模拟出底栖生物栖息密度的分布趋势,但是在整体趋势和局部趋势两方面的综合考虑下,普通克里格的表现效果更好。文章进一步指出,在确定站位数量及分布前提下,插值结果的精确度可以通过选择空间插值方法得以改善,但其根本还是取决于站位布置的数量和其分布合理性。     

长江口海域近50a来营养盐的变化及其对浮游植物群落演替的影响

本文根据收集到的1960s到2000s年间东海长江口附近海域(30.5～32°N,122～123°E)的营养盐数据,分析了长江口海域营养盐的季节变化及历史变化趋势。其中根据1959～1960年,1985～1986年和2002～2003年长江口海域营养盐的季节变化数据,发现50 a来,营养盐的季节变化差异不大,均呈现出春夏低,秋冬高的季节变化趋势,其中2002～2003年四个季节之间营养盐含量的变化幅度较其它两年略小。从1960s～2000s年的历史变化可以看出,调查海域的DIN含量呈现出显著上升的趋势,但是在2000年以后,DIN的年平均含量略有降低但变化不大,基本保持在18μmol/L。DIP年平均浓度变化不明显,浓度范围维持在0.39～0.60μmol/L之间。SiO3-Si的年平均含量呈现出明显的降低趋势。就营养盐组成变化来说,DIN/P比例和Si/DIN比值的变化趋势相反,DIN/P比例呈现出升高的趋势而Si/DIN呈现出降低的趋势。生物数据表明从1980s以后该海域赤潮优势种有从硅藻演变为甲藻的趋势,结合营养盐的变化分析认为过量的DIN和持续升高的DIN/P是造成这一藻种长期演变现象的主要原因。     

可吸入颗粒物污染与气象因子的关系

对闸北区空气自动监测站2009年SO2、NO2、PM10的浓度和气象参数变化特征进行研究,可吸入颗粒物的时间变化特征表明,总体上呈现冬春季高、夏秋季低;PM10与降水量、相对湿度、温度呈现一定的负相关性,但与风速的相关性随季节不同而不同,与气压略呈正相关性。对典型日和灰霾日PM10、SO2、NO2以及相应气象因子的特征进行了分析比较。     

上海市青浦城厢地区可吸入颗粒物污染状况分析

为了研究青浦城厢地区可吸入颗粒物污染状况,分析了2005年至2010年空气质量资料,结果表明:青浦城厢地区首要污染物为PM10,其质量浓度呈逐年下降趋势。PM10浓度的月度变化幅度比较大,全年PM10浓度及超标率呈现"高一低一高"的变化趋势。春、冬季比较高,夏、秋季比较低。PM10质量浓度的日变化非常明显,呈现出"双峰"状分布。PM2.5和PM10的平均比值为0.531,表明该地区可吸人颗粒物中细颗粒物的比例较高,细颗粒物对人群的健康影响更为严重。PM10和PM2.5各月日均值之间和各月均值之间均呈高度相关,线性关系非常显著,二者之间回归直线关系存在,可用回归方程y=ax+b进行计算。     

上海市闸北区城市河道水质演变规律和新出现的问题

通过对十年来上海市闸北区范围内彭越浦、走马塘和西泗塘三条河道上的四个监测断面的水质监测数据,选取高锰酸盐指数、化学需氧量、生化需氧量、氨氮、石油类、总磷和挥发酚七项指标,运用水质综合指数法探讨了水质变化趋势、时空变化特征、主要污染因子及其变化趋势,在发现水质显著改善的同时,对新出现的问题进行了探讨。     

基于SOM和多元分析的滇池沉积物污染特征空间模式研究

联合运用层次聚类分析(HCA)、判别分析(DA)和自组织映射神经网络(SOM)3种数值方法,对滇池2008—2010年17个底泥监测点位(10个常规点位及7个新增点位)9种污染物进行空间差异性和相似性分析,并评价各指标在空间的分布特征及监测点代表性.结果表明:滇池沉积物整体污染程度为草海>外海中部及南部>外海北部.As、Hg、Pb、Cd、Cu和Zn污染最严重的点位是断桥;草海中心的凯氏氮污染最严重,其他指标污染水平仅次于断桥;Cr和TP污染最严重的点位是新增点位盘龙江2;海埂是全局污染最轻的点位.现有的常规监测点位对整体污染特征的代表性较弱,建议取消异质性最低的白鱼口、观音山西、观音山东和罗家营站点;考虑污染特征和监测点位空间分布的均匀性,建议将盘龙江2、海埂和马料河设为常规监测点位.     

上海市大气总汞季节变化特征及与气象条件的关系

2008年到2010年对上海市西南部大气中总汞(TGM———Total Gaseous Mercury)的污染水平进行监测,结果表明TGM日均浓度为ND~57.23ng/m(3(7.79±3.29)ng/m)3。TGM呈现出一定的季节性变化特征,浓度最高的是秋季,然后依次是冬季、春季、夏季,平均浓度分别为(9.30±2.48)、(8.32±2.79)、(7.78±2.33)、(2.16±3.29)ng/m3。TGM浓度受东南风向影响最大,其次为西北和东北风向。在置信水平为95%的情况下,TGM浓度与日平均温度呈正相关性,而与日温差、相对湿度、日相对湿度差、风速无显著相关性。但TGM浓度分别与日均O3浓度和NO2浓度均呈显著正相关。利用HYSPLIT_4模型对TGM浓度高值与低值几天的空气气团来源轨迹进行反演,结果发现高低浓度日的气团来源略有差别,总体上看,冬季、春季和秋季受北方气团影响较大,夏季则受我国东部海域影响,具体的局部和长距离输送的贡献需要进一步研究。     

Water quality evaluation based on improved fuzzy matter-element method

For natural water, method of water quality evaluation based on improved fuzzy matter-element evaluation method is presented. Two important parts are improved, the weights determining and fuzzy membership functions. The coefficient of variation of each indicator is used to determine the weight instead of traditional calculating superscales method. On the other hand, fuzzy matter-elements are constructed, and normal membership degrees are used instead of traditional trapezoidal ones. The composite fuzzy matter-elements with associated coefficient are constructed through associated transformation. The levels of natural water quality are determined according to the principle of maximum correlation. The improved fuzzy matter-element evaluation method is applied to evaluate water quality of the Luokou mainstream estuary at the first ten weeks in 2011 with the coefficient of variation method determining the weights. Water quality of Luokou mainstream estuary is dropping from level I to level II. The results of the improved evaluation method are basically the same as the official water quality. The variation coefficient method can reduce the workload, and overcome the adverse effects from abnormal values, compared with the traditional calculating superscales method. The results of improved fuzzy matter-element evaluation method are more credible than the ones of the traditional evaluation method. The improved evaluation method can use information of monitoring data more scientifically and comprehensively, and broaden a new evaluation method for water quality assessment.